Holophagae

Holophagae
Scientific classification
Domain:	Bacteria
Phylum:	Acidobacteriota
Class:	Holophagae; Fukunaga et al. 2008
Type genus
	Holophaga; Liesack et al. 1995
Orders
	Acanthopleuribacterales; Holophagales; Thermotomaculales; "Ca. Porrumbacterium" Nunes da Rocha et al. 2013;
Synonyms
	"Holophagia" Oren, Parte & Garrity 2016;

Holophagae is a class of Acidobacteriota.^[1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature.^[2] Numbered orders do not yet have any cultured representatives.

16S rRNA based phylogeny^[3]

16S rRNA based LTP_08_2023^[4]^[5]^[6]

120 marker proteins based GTDB 08-RS214^[7]^[8]^[9]

Order 6-4

Order 6-3

Order 6-2

Thermotomaculales

	Acanthopleuribacterales

	Holophagales

Acanthopleuribacterales	Acanthopleuribacteraceae

Holophagales	Holophagaceae

Thermotomaculales	Thermotomaculaceae

Acanthopleuribacterales	Acanthopleuribacteraceae

Holophagales	Holophagaceae

References

^ ^a ^b Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008). "Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum "Acidobacteria"". Int J Syst Evol Microbiol. 58 (Pt 11): 2597–2601. doi:10.1099/ijs.0.65589-0. PMID 18984699.
^ ^a ^b Euzéby JP, Parte AC. "Holophagae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 8, 2022.
^ Dedysh SN, Yilmaz P. (2018). "Refining the taxonomic structure of the phylum Acidobacteria". Int J Syst Evol Microbiol. 68 (12): 3796–3806. doi:10.1099/ijsem.0.003062. PMID 30325293. S2CID 53502177.
^ "The LTP". Retrieved 20 November 2023.
^ "LTP_all tree in newick format". Retrieved 20 November 2023.
^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

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[Fukunaga-1] Fukunaga Y, Kurahashi M, Yanagi K, Yokota A, Harayama S. (2008). "Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum "Acidobacteria"". Int J Syst Evol Microbiol. 58 (Pt 11): 2597–2601. doi:10.1099/ijs.0.65589-0. PMID 18984699.

[LPSN-2] Euzéby JP, Parte AC. "Holophagae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 8, 2022.

[D&Y-3] Dedysh SN, Yilmaz P. (2018). "Refining the taxonomic structure of the phylum Acidobacteria". Int J Syst Evol Microbiol. 68 (12): 3796–3806. doi:10.1099/ijsem.0.003062. PMID 30325293. S2CID 53502177.

[LTP-4] "The LTP". Retrieved 20 November 2023.

[5] "LTP_all tree in newick format". Retrieved 20 November 2023.

[6] "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.

[about-7] "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.

[tree-8] "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.

[taxon_history-9] "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

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Phylogeny

See also

References