Methanomicrobiales

Methanomicrobiales
Scientific classification
Domain:	Archaea
Kingdom:	Euryarchaeota
Class:	Methanomicrobia
Order:	Methanomicrobiales; Balch and Wolfe 1981
Families
	Methanocalculaceae; Methanocorpusculaceae; "Methanoculleaceae"; Methanospirillaceae; Methanomicrobiaceae; Methanoregulaceae; "Methanosphaerulaceae";

In the taxonomy of microorganisms, the Methanomicrobiales are an order of the Methanomicrobia.^[1] Methanomicrobiales are strictly carbon dioxide reducing methanogens, using hydrogen or formate as the reducing agent.^[2] As seen from the phylogenetic tree based on 'The All-Species Living Tree' Project the family Methanomicrobiaceae is highly polyphyletic within the Methanomicrobiales.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[3] and National Center for Biotechnology Information (NCBI).^[1]

16S rRNA based LTP_06_2022^[4]^[5]^[6]

53 marker proteins based GTDB 08-RS214^[7]^[8]^[9]

Methanomicrobiaceae (incl. "Methanoculleaceae")

"Methanosphaerulaceae"

Methanolinea tarda

Methanospirillaceae

	Methanolinea mesophila

	Methanoregulaceae

"Methanofollaceae"

	Methanocalculaceae Zhilina et al. 2014

	Methanocorpusculaceae

Methanocorpusculaceae Zellner et al. 1989 (incl. Methanocalculaceae)

"Methanofollaceae"

"Methanosphaerulaceae" Rinke et al. 2020

	Methanospirillaceae Boone et al. 2002

	Methanoregulaceae Sakai et al. 2012

	"Methanoculleaceae" Rinke et al. 2020

	Methanomicrobiaceae Balch & Wolfe 1981

References

^ ^a ^b Sayers; et al. "Methanomicrobiales". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-06-05.
^ D.R. Boone; et al. (2001). Bergey's Manual of Systematic Bacteriology (2nd ed.). New York: Springer.
^ J.P. Euzéby. "Methanomicrobiales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-11-17.
^ "The LTP". Retrieved 10 May 2023.
^ "LTP_all tree in newick format". Retrieved 10 May 2023.
^ "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

Judicial Commission of the International Committee on Systematics of Prokaryotes (2005). "The nomenclatural types of the orders Acholeplasmatales, Halanaerobiales, Halobacteriales, Methanobacteriales, Methanococcales, Methanomicrobiales, Planctomycetales, Prochlorales, Sulfolobales, Thermococcales, Thermoproteales and Verrucomicrobiales are the genera Acholeplasma, Halanaerobium, Halobacterium, Methanobacterium, Methanococcus, Methanomicrobium, Planctomyces, Prochloron, Sulfolobus, Thermococcus, Thermoproteus and Verrucomicrobium, respectively. Opinion 79". Int. J. Syst. Evol. Microbiol. 55 (Pt 1): 517–518. doi:10.1099/ijs.0.63548-0. PMID 15653928.
Euzeby JP; Tindall BJ (2001). "Nomenclatural type of orders: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses. Request for an Opinion". Int. J. Syst. Evol. Microbiol. 51 (Pt 2): 725–727. doi:10.1099/00207713-51-2-725. PMID 11321122.
Rouviere P; Mandelco L; Winker S; Woese CR (1992). "A detailed phylogeny for the Methanomicrobiales". Syst. Appl. Microbiol. 15 (3): 363–371. doi:10.1016/S0723-2020(11)80209-2. PMID 11540078.
Balch WE; Fox GE; Magrum LJ; Woses CR; et al. (1979). "Methanogens: reevaluation of a unique biological group". Microbiol. Rev. 43 (2): 260–296. doi:10.1128/MMBR.43.2.260-296.1979. PMC 281474. PMID 390357.

Scientific books

Garrity GM; Bell JA; Lilburn TG (2004). "Taxonomic Outline of the Prokaryotes". Bergey's Manual of Systematic Bacteriology, release 4.0 (2nd ed.). New York: Springer Verlag. doi:10.1007/bergeysoutline200310.

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[NCBI-1] Sayers; et al. "Methanomicrobiales". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-06-05.

[2] D.R. Boone; et al. (2001). Bergey's Manual of Systematic Bacteriology (2nd ed.). New York: Springer.

[3] J.P. Euzéby. "Methanomicrobiales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-11-17.

[4] "The LTP". Retrieved 10 May 2023.

[5] "LTP_all tree in newick format". Retrieved 10 May 2023.

[6] "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.

[about-7] "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.

[tree-8] "ar53_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.

[taxon_history-9] "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.

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Phylogeny

See also

References

Further reading

Scientific journals

Scientific books